MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Staphylococcus aureus
STF.1
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 123
bases: 2,698,428 bps
CDS: 2,464
rRNA: 9
Repeat region:
tmRNA: 1
tRNA: 60
misc RNA:
Total features: 2,534
Total number of protein coding genes annotated/found:
2,464
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Items 21 - 40
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Molecule
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5004|JADGKH010000030.1
SEQF5004_01461
Genome Viewer
NA
AA
234/78
8470-8237
RNA-binding protein Hfq
SEQF5004|JADGKH010000030.1
SEQF5004_01462
Genome Viewer
NA
AA
936/312
9420-8485
tRNA dimethylallyltransferase
SEQF5004|JADGKH010000030.1
SEQF5004_01463
Genome Viewer
NA
AA
918/306
10355-9438
Monoacylglycerol lipase
SEQF5004|JADGKH010000030.1
SEQF5004_01464
Genome Viewer
NA
AA
1674/558
12175-10502
Aerobic glycerol-3-phosphate dehydrogenase
SEQF5004|JADGKH010000030.1
SEQF5004_01465
Genome Viewer
NA
AA
1497/499
13829-12333
Glycerol kinase
SEQF5004|JADGKH010000030.1
SEQF5004_01466
Genome Viewer
NA
AA
819/273
14776-13958
Glycerol uptake facilitator protein
SEQF5004|JADGKH010000030.1
SEQF5004_01467
Genome Viewer
NA
AA
534/178
15784-15251
Glycerol uptake operon antiterminator regulatory protein
SEQF5004|JADGKH010000030.1
SEQF5004_01468
Genome Viewer
NA
AA
2010/670
17808-15799
DNA mismatch repair protein MutL
SEQF5004|JADGKH010000030.1
SEQF5004_01469
Genome Viewer
NA
AA
2619/873
20439-17821
DNA mismatch repair protein MutS
SEQF5004|JADGKH010000030.1
SEQF5004_01470
Genome Viewer
NA
AA
492/164
21233-20742
hypothetical protein
SEQF5004|JADGKH010000030.1
SEQF5004_01471
Genome Viewer
NA
AA
366/122
21625-21260
putative protein YmcA
SEQF5004|JADGKH010000030.1
SEQF5004_01472
Genome Viewer
NA
AA
1545/515
23170-21626
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase
SEQF5004|JADGKH010000030.1
SEQF5004_01473
Genome Viewer
NA
AA
294/98
23597-23304
hypothetical protein
SEQF5004|JADGKH010000030.1
SEQF5004_01474
Genome Viewer
NA
AA
867/289
24557-23691
hypothetical protein
SEQF5004|JADGKH010000030.1
SEQF5004_01475
Genome Viewer
NA
AA
1761/587
26318-24558
2-oxoglutarate oxidoreductase subunit KorA
SEQF5004|JADGKH010000030.1
SEQF5004_01476
Genome Viewer
NA
AA
798/266
27255-26458
2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase
SEQF5004|JADGKH010000030.1
SEQF5004_01477
Genome Viewer
NA
AA
216/72
27429-27644
hypothetical protein
SEQF5004|JADGKH010000030.1
SEQF5004_01478
Genome Viewer
NA
AA
1560/520
29500-27941
Ribonuclease Y
SEQF5004|JADGKH010000030.1
SEQF5004_01479
Genome Viewer
NA
AA
1044/348
30897-29854
Protein RecA
SEQF5004|JADGKH010000030.1
SEQF5004_01480
Genome Viewer
NA
AA
1152/384
32213-31062
Putative competence-damage inducible protein
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Items 21 - 40
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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